Scaffold Ga0214917_10041757

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10041757
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3237
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F020860	Metagenome / Metatranscriptome	221	N
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100417571	F010897	N/A	LKEIIKWCMPQGVFLKDIRKIDIGNTKLGWHGRAWGSMRLHVGVPAYNKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHIYQYKKGKFYHGIKKIRKYNMGTKAKLCEVDASLYAMRKVREYRKNNIKFNLV
Ga0214917_100417574	F020860	AGTAG	MEITKAKKLKEGGYALYGTDSKTKQEIQVGYIGENLTLEAWLPKGVKVENS
Ga0214917_100417576	F010746	N/A	MTYKCAVSGEAIPPERVEALQVLGVPESQWTKIEYSQTRKLKAVYAGDDGSNDIVICDNVDGGSMFDNAVVAETENDI
Ga0214917_100417577	F035200	GGAG	MTSKFIVLRDGVRVSEDMHSSEASAEVEANYWREIIKRWPDGTKVIVKKIGG