Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10041459 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10041459 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3255
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3255

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F017972	Metagenome	237	Y
F031792	Metagenome	181	Y
F044984	Metagenome / Metatranscriptome	153	Y
F060700	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100414591	F060700	N/A	IREVLVLQNGGGSCILFLSTQSRADFRKGLEMKKTLKELAAEINIDEKYFDNNFLMLDNRYAVMQDEKGLHLTDVFSWASFSPIKIGRQSNATVKGLQFQIGQYKVYIKQLQEAK
Ga0214917_1004145910	F017972	GGAGG	VRTRHLRLVTHEHSVTTDEKSPALSAFGPVNPASTTLLAQETLRVNQLRQLTELLNSLESVVANLNYKSSTALDTLLIATQGVRVALSATPLEEGGTNANGR
Ga0214917_100414596	F031792	GGA	MSYEPDWNDPVFYAEEYDQPVKCFSCGDPLDRDDVVWADDKGQIGEKEGNDTAWCVACLPSEKGEEK
Ga0214917_100414597	F000821	GGAG	MNDEYLQAKFNLCIDQAEKNIQEQDIANAIKNLQRANSAMSRLFGIEENND
Ga0214917_100414598	F001477	GAGG	MTNVYTIHPKKSDLILFYEVVEPDGGNTWGGAEAEHCIQWLSLAPAGSRVLVSAWDSDEEDAHLVGQTIDITDIVRAASL
Ga0214917_100414599	F044984	GGAGG	MDDEAKRRMATASRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKLEDEKQGKTWISIDGTTVLSVGVHTRAIGANDLAHSSNESQDASNDGGKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10041459

Overview

Ecosystem & Geography

Associated Families

Sequences