NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10038768

Scaffold Ga0214917_10038768


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10038768 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3419
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Hnatkovirus → Hnatkovirus DS6A(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026210Metagenome / Metatranscriptome198Y
F048101Metagenome / Metatranscriptome148N
F048121Metagenome / Metatranscriptome148N
F066486Metagenome / Metatranscriptome126Y
F071966Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100387681F048121N/AMNTTQTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGSVVS
Ga0214917_100387684F071966GAGGMSLLGIEFDVKGYIFKPFYLVLGMLYFTILLALLGCLYMVLFIRNTLEIVLKDIEKNRKKYKRLG
Ga0214917_100387685F026210GGAGMSHFINANPLNYDAKYPQKADSSVNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVIVDRNGTPWEWYVREEAIRFVGNTAK
Ga0214917_100387687F066486N/AMKNKTLSKNDPYYLKIGKFKKKSVYDAKVDMSDQMENTFESLGREHITKEQYINIGFNYAVAKGIEYTKVLVKKKNK
Ga0214917_100387689F048101N/AMKMKKFKTIKDYLETCSEDEKEFIYDIYFDMSVDDLVEIIFGNLPPDDVIQEIEEYREEMEWDDNEAEKSNKSKRKCDCDFVGCQGC

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