Scaffold Ga0214917_10038768

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10038768
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3419
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Hnatkovirus → Hnatkovirus DS6A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026210	Metagenome / Metatranscriptome	198	Y
F048101	Metagenome / Metatranscriptome	148	N
F048121	Metagenome / Metatranscriptome	148	N
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100387681	F048121	N/A	MNTTQTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGSVVS
Ga0214917_100387684	F071966	GAGG	MSLLGIEFDVKGYIFKPFYLVLGMLYFTILLALLGCLYMVLFIRNTLEIVLKDIEKNRKKYKRLG
Ga0214917_100387685	F026210	GGAG	MSHFINANPLNYDAKYPQKADSSVNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVIVDRNGTPWEWYVREEAIRFVGNTAK
Ga0214917_100387687	F066486	N/A	MKNKTLSKNDPYYLKIGKFKKKSVYDAKVDMSDQMENTFESLGREHITKEQYINIGFNYAVAKGIEYTKVLVKKKNK
Ga0214917_100387689	F048101	N/A	MKMKKFKTIKDYLETCSEDEKEFIYDIYFDMSVDDLVEIIFGNLPPDDVIQEIEEYREEMEWDDNEAEKSNKSKRKCDCDFVGCQGC