NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10038719

Scaffold Ga0214917_10038719


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10038719 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3422
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003304Metagenome494N
F004010Metagenome / Metatranscriptome457Y
F021063Metagenome / Metatranscriptome220N
F022371Metagenome / Metatranscriptome214Y
F033721Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1003871911F004010AGGAMPLGKDVSKNMSELARDNRRKGKERGAGGKPRSRQQMIAIALSAAGKSNKSPRKFRMRSG
Ga0214917_100387193F033721AGGAGGMRWIKKELDEDGKPQWAVYIDVVGEGREEDLDHFDTYPTRDEAVKACWKYTWEDYDKRDK
Ga0214917_100387194F003304GAGMKQALVTQCFGDDWNKIIGLTRPRMEDYCKRHGCDFILIDKPLTNPMQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPEMAKLAGTFGGMIEPKFYVNTGVFVIHSKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTDLDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLTKLADQIKSDDAKLAELGR
Ga0214917_100387195F021063GGAGVRSTQLCHGNYDERLQQLAGEVALQAIRDLRMLRKRGMVKGLKIVKDHTDVPLNDALEYKNSHEVQKLLRDFKNGTVAWWCRASGVRIDNRTLLRRMQDDYAVLF
Ga0214917_100387196F022371AGGAMLCFFELADVAWVIGWFVLYSWLILSAIYVALFIIFKVVDFIKKELEL
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Institute for Fundamental Biomedical Research
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