Scaffold Ga0214917_10033138

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10033138
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3827
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010897	Metagenome / Metatranscriptome	297	Y
F025679	Metagenome / Metatranscriptome	200	Y
F035215	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100331386	F025679	GGA	MTKTFKIGETALGGTIKVSIPKTLTNIKIDVISTNHITRDSCDAPYLINQYIYYSFDRIRIERDLFQIVSGYWSDQILAWINKSWQSQLAKI
Ga0214917_100331388	F035215	N/A	MSRKRRMKMKSSEQIAKEISDRIAEYKVLMVEHDNNQSAVDELESAIHELDHLLRWINE
Ga0214917_100331389	F010897	N/A	MPDGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPKYGKYIRPYNTGGRKGYLSVETYSWEEGLIELISHELRHLYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKGNYKLNLV