NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10030554

Scaffold Ga0214917_10030554


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10030554 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4055
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005233Metagenome407Y
F075712Metagenome118Y
F090308Metagenome108Y
F091934Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1003055410F090308GGAGMYETYLKLSANEIHNRLTERNLHPAEIERIKGEVLELKETLRVSKITRTQRKAEWDKVLQPLRYEINNARVGLRYGGENSPQERTLAFSEYIRIMEKLIAMLDAPSKALDHTPIQIARDKGLPNDGEHWTDWIPARVKEKIALLFEAVPVVPRGKRKTPFQRTMLPHQHETAKVRLLTKTKREMETLMRQADINPTVKRLDKIKQMKRAIKIIETLDNNEAVPATWTKLHIQGE
Ga0214917_100305542F005233AGGAGMACAITGNKCTLTPTRPQVRRQHKPYAMLEHLINGEFEPSVVDMTAATPLPFADAEPADIIDAQVKTAEWLRELELDDDEAESKADAQAARNSFASLVTGQPPQNTQQALANIKAPAAVQHLVGMLTAYDWAFVEQAKELRGYAVAQILEEVKHPDARIRLKALDMLGKVTEVALFTERIEVKKTQMTDVELETRIKEKLNRFMGVIDVVDVAEDKDEA
Ga0214917_100305543F075712AGGAGMTKATTVVVTYQQFARGIGASDRITLEASLPWHKQYLKLSAEKQSEWRYDFVLNYVIGRLDCTQKEAEAICEKTRVQRTANEEKVVNAGGKKFSFHISRTESSSGNKPVVAVPKQLVSNIVAEIIDAGLTKAQFDALLAQLRDSVSFK
Ga0214917_100305548F091934AGGAGMRNLIQPITKEVGIITIRGRDYHMQTISYGSQHQVHVFRKGALHLRGLVFETQADYDQWRNGMHQLDLPFGEKSPQVHQ
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