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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10030031 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4107 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030060 | Metagenome | 186 | N |
| F081046 | Metagenome | 114 | N |
| F086811 | Metagenome | 110 | N |
| F088509 | Metagenome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_100300312 | F086811 | N/A | MISPQFKIEDALASLLMPIPGLNVCIANRRGLRLFPYATIKAAIGSQQIISYSGVFEISVELNYSDSATRTTQAIFDDNYYSIFSTLYSNNNTLKAKVQDKVTDLKIFMGRITTQTPTIRADKRAWQRGLTLSFIVTPDPAADGTRNYDFSDFLNSFYLGTI |
| Ga0214917_100300313 | F088509 | N/A | MISIERQIENGLATALAGISGVNIYKSDTEGQRLLPNLVIQASIGSEEIIPYSGVFRCTVTITYATRADTTTRSTFDAKFQEILQVMYQEPNLASVLTTATLKVFLANVSSESPDIRAENRTWSKTLSLDISCTSI |
| Ga0214917_100300315 | F081046 | GAG | MTAKTIKYPQRLGDIIRCLPACKYLADQGHEVFFDCLPQYHGIFEMVSYVKVGSKGDVIDLEIWPNKYQQYRFSNKTWTEFVYAHQDINKADPKDILFDKLDDAPAKGLPETYNMVAPFGISQGHKRDPLQIIVEARKKCGENNFFVLCPPGMEIKGLRTYTAPNVPEMARAIRGANEFWSIDSGQMAIAAGVRKESKVVYFPQTIEPFDKDNIFIWDSVEIN |
| Ga0214917_100300317 | F030060 | N/A | TESERQEANGTTKYFLSQKPEFYMGVDINQGDINTLSHQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLKEFIDWLDSIGFECYRHDSVSFCPEISVIYGRLKC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |