Scaffold Ga0214917_10028641

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10028641
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4254
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1002864110	F016115	AGGA	MVGRDGDVAIYKKKLDEADSEAFNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCIDREDADKRFVQLKEKLSAYVATSTLANGEKRGRGRPRKIDLTKTELVVS
Ga0214917_1002864111	F020860	AGTAG	MEITKAKKLKEGGYALYATDPKTKTETQVGYIGEELPLEGYLPKGLKIENS
Ga0214917_100286415	F007359	AGGA	MTLIKQNLGAHWVIGMKGKVEDIEQFHNRIYNWGGTNGSIQWMSESFGYFWITMEKLERVMFKYMLNGMSDKLGKKFRGKKGGMKAVAMHRMKNAIANIPVESFMHTAQAQDFYSIGTISAEKLDTDS
Ga0214917_100286419	F010746	N/A	MTYKCAVSGEALPPERVEALQVLGVPESQWTKKEYSQTRKLKAVYAGDDGSNDIVICDAVDGGSLFDNSVVMEVENEC