Scaffold Ga0214917_10028376

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10028376
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4283
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F011753	Metagenome / Metatranscriptome	287	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y
F025457	Metagenome	201	N
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100283761	F011753	N/A	NVEKTYWCEKGLVGGGYAGRCDAYVKLRGIGDAIIDLKNRKVSPKYDPFYDTDCAQLWAYRAASENPQCACVSVVLASNDATKLTTKVWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMK
Ga0214917_1002837611	F002826	AGG	MLVESKARLKWGRDILLTARDKLAVERDRASHGHAIDIIRIIAMVDAAALIAKEILEEDEKGLTQQNDTIERNTNERN
Ga0214917_1002837613	F025457	AGGAG	MKLWTNNTNAIHKVDDNMLHPRNTYVLPDELTGPIWDDSIPCPHKIKPYYKGRAMGGATAVYRAGAIGDAIIATAFVNYLVQESGGVVDVYAPARNLPLYAGLGAKLWPLPCSLEAFDSYDAHLCTDDLFSGQVGNTKLGTGGGNCYQRIYEWMGVWDEKKMAKYCKPVLHLIEPDHEELKAMGKLPLPDPYFAYHVSSSGPTRTYPPTMGQEAVLGLL
Ga0214917_100283763	F041081	GAGG	MIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCYAEVVNNVIMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK
Ga0214917_100283764	F003304	N/A	MKQALVTQSFGEDWQKILDLTRPRMEDYCKRHSTDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKISDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGVIEPKFYVNTGIFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVELGR
Ga0214917_100283765	F021063	GGAG	VRSTQLCRGDYDDRLQQLAGEVALQAIRDLRMLRKRGMVKGMKIVKDHQGVPLNDALEYKNSHEVQKLLRDFKNGTVSWWCRASGVRIDNRTLLRKLKENDYALPT
Ga0214917_100283766	F022371	AGGAG	MLCLLELKEIVWVIGWFILYSWLILSAIYCAGYIILKLIDFIKEELEL