NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10023403

Scaffold Ga0214917_10023403


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10023403 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4941
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F009264Metagenome / Metatranscriptome320N
F090286Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100234033F090286N/AMKILNLFKKKPSEPEASKIETLLPEQHYVKISLEVEYLLGKQLYIYTSNYVVTCENEQMFNEGKEKQAKIFSAIIKDIHEKLDDKSSDYIRVGESMLLKKSDFVNARIVYNYKKTNEHPR
Ga0214917_100234034F000962N/AMNIHVPEELKKKYPQYEFRGKRREINDRIVIEAYNPVTEQTFYYSFEEDFFWFAGQIPDYKLQKAH
Ga0214917_100234038F009264N/ALQDRLDNALKDDHTVHMRAYLEFSFIDQEIDHLNKIGFGAKIIDAYEMENGFVAVVVDWDSKTDSHKLKYASQGCVTYSSDKIVGVELEFRDYPYKIDDCQMNPRISVKLDYDDFDKKMDYVCFQNLKYQAVVYFAPDSWNCSRKSKKIKF

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