Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10022277 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10022277 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5123
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5123

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (86.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000714	Metagenome / Metatranscriptome	924	Y
F001460	Metagenome / Metatranscriptome	690	Y
F005745	Metagenome / Metatranscriptome	391	Y
F023344	Metagenome / Metatranscriptome	210	Y
F050377	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100222771	F000714	N/A	TCPCNSKCTLLSVEDATIPYTETKGNEMETTDTNVSPAVDYNPDLLVTYKVLHSYGDPEYATDKVRNIEWDLHNARQTQKTVGNLQSKIDSVKDIIIEAYEMSDDQETLQSIAEALGIELTRDVEFTATLEVRGTITLNILEDYDLETEITDALYADANNGNIVIDDTEVCHVREAY
Ga0214917_1002227710	F005745	N/A	MMNTLELDDHLQKAVDHGVSGTDILHGELKRLLVEAEQELLEAQRIEEDNDYSDAMESMERKYWEGQCDALVHVYQLTYALSFAISDRIKNETTR
Ga0214917_1002227714	F050377	AGGA	MATTTTREYLKTQGIAVGKRGRFSAAAKNAISEAAKKGVEFSDKKNVK
Ga0214917_100222772	F000311	GAGG	MYFELTAPDRLSMEMAYWDAQIMGLDPQAMTPLTFNIGTGSIEKVSRIRDKFNLVESYVSDYEPTGYVRS
Ga0214917_100222775	F000450	AGGA	MGDRANFVFVQPSGETIVLYGHWAGSGMLETLAEAVAKAQSRWTDPSYATRIAISQMIGDTWGMETGWGLQVNEISDNEHKIPVVNWLESTFSLHEEDSFFNADNKVRGMNNEAIFTMDLREFVEKYSDAKILV
Ga0214917_100222777	F023344	AGGCGG	MEAFTDTLGEHLLGAIQVDIEQHLFEQWNNSNLDEGTEYAEFKFIQFAPDSVKQSYNEYYGYKEGDEYYVGI
Ga0214917_100222778	F001460	AGGAG	MLGYDVDDLDRMINAVHDAKLFYLRYPSDLMDKQPLKKDLEDAVSFMQGLWAEGYFD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10022277

Overview

Ecosystem & Geography

Associated Families

Sequences