NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10021640

Scaffold Ga0214917_10021640


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10021640 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5232
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005846Metagenome388Y
F011284Metagenome292N
F027777Metagenome / Metatranscriptome193N
F074559Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1002164011F074559N/AMKQNPWQKLLQEHIKDKFAPPPPAGYHTREEVSKLWGKSMNTTSRMLSQMLLEKKVDMKRHPFIIPRKDHRVVRNLKIYKILPTKHPHK
Ga0214917_1002164013F011284AGCAGMTSEQGVEQTEEKVFTKKHDLHLTTLQMAAVESMERKYKKGVVENCGTKLWEMPTARLVEEAIAEATDQMVYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPL
Ga0214917_100216406F027777AGGAMSEEMPTFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDQRNDFRFLNLPKTHKENAEGFGVFDDGQKKQ
Ga0214917_100216409F005846N/AMTSFPLPARPQASAVPASHIEFKKDTAIEGKANGWRGLFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDLQPNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPSWQKQRIRW
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