Scaffold Ga0214917_10020123

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10020123
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5513
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1002012311	F023834	GGAGG	MSKPTVDYWRAKAELCRDLALIQIQDEELEKEAGMNLMRMTYALSMVDTFNEGGEGQ
Ga0214917_1002012315	F055450	GGAGG	MEAENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLSGNTVPVVGVRIRTADGRGAPVIKDHLDKGTDEGNDGGEA
Ga0214917_1002012316	F014590	GGAGG	VRTRHLQLVTHEHSVTIKTRSDVLSPYGPVRAGLTTSQTTSDQALTELLNSLESVVASLNFKSFTALDTLVLAIQGVRVALYSTVTEEAGTDTL
Ga0214917_1002012317	F013279	AGGAG	MMYDYRCPDCKTELTIERSIHEEPREPSCFDCHVSMIRKWDAPSVTFKGKGFYSTDK
Ga0214917_100201238	F005558	AGGAGG	MTTDQDSMSWSELAQLTHATQVERFNWCICEDNEGQENPYNDCPKEAE
Ga0214917_100201239	F026864	AGGAGG	MSEQEKMAQFVFTVVIAPANKQYDVELWDFAGDEPKQLATGGGSNWRTALGEALSKIELPTDKQEKTINDLIKEGVEDDAV