NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10018726

Scaffold Ga0214917_10018726


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10018726 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5795
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002071Metagenome / Metatranscriptome596Y
F007263Metagenome / Metatranscriptome354Y
F058756Metagenome / Metatranscriptome134Y
F091920Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100187261F058756N/AVCTGDCDALIEYTFKDGFGWPNGVTQLTCPCNSKCTLLSVEDATIPYTETKGNEMETTDTTVSPAVDYNPDLLVTYKVLHGYGDPEYATDKVRNIEWDLHNARQAQKTVGNLQSKIDSVKDIIIEAYEMSDDQETLQSIA
Ga0214917_1001872612F007263AGGAMSLNIIDKTDFYEIADEQHFCCDESQFKYYCIEHLEFMGCYFCQFDYDKDCEEQH
Ga0214917_100187263F091920N/AMKNRFRVEIYDENKLNDVTIYSEQGIDKEYLTEIVFSNLAKFSGNVKAYVYDELKKTKTVALFLPESTVMKYKPKQLTRVELGLI
Ga0214917_100187265F002071N/AMERKKMNATLSVGQTYTTTQSKITGVIKKIDKHPSGVSRILLDVNGTDRWTSVSN
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