NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10017313

Scaffold Ga0214917_10017313


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10017313 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6121
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Shapirobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001459Metagenome / Metatranscriptome690Y
F004760Metagenome / Metatranscriptome424N
F010603Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100173134F010603AGGAGMANEFARSTRKAKNKAIRFDTQGFTNVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT
Ga0214917_100173135F004760AGAAGMPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLTLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAFRRKKYGE
Ga0214917_100173139F001459N/AMRKLKAALAFIRDQEWVNEPQWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNASAVMKKSGELAEACGHARGYRACVATLESLASQKLNSAILGYGDGSDEPVAD

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