Scaffold Ga0214917_10017313

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10017313
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6121
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Shapirobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100173134	F010603	AGGAG	MANEFARSTRKAKNKAIRFDTQGFTNVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT
Ga0214917_100173135	F004760	AGAAG	MPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLTLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAFRRKKYGE
Ga0214917_100173139	F001459	N/A	MRKLKAALAFIRDQEWVNEPQWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNASAVMKKSGELAEACGHARGYRACVATLESLASQKLNSAILGYGDGSDEPVAD