Scaffold Ga0214917_10017127

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10017127
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6172
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049582	Metagenome / Metatranscriptome	146	Y
F053831	Metagenome / Metatranscriptome	140	N
F060634	Metagenome	132	N
F062703	Metagenome / Metatranscriptome	130	N
F063331	Metagenome / Metatranscriptome	129	Y
F074452	Metagenome / Metatranscriptome	119	N
F074804	Metagenome / Metatranscriptome	119	Y
F080943	Metagenome / Metatranscriptome	114	N
F083781	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100171271	F083781	GGAGG	MKHINIEKFQKEAIDLAKTSNGNNPSFTGGSLYAEMIDADHAELLRADLEDFTNANWGDGDKNSPHGTAVKMYKLAEQNGRTEFVYDFVPGPGVVDDDLPPEVDMMLCLEAEIARGK
Ga0214917_1001712710	F062703	GGAGG	MLKRKIIDNNSKTGMMVGYIHHSGDVTAIEPGWNMTPVVLAKLLKDLYPNKQDAIQLVDSAVLVPVFRKEDYQYVDGFGGVLESNINFYEENQRNHVGHLFLFMKGAWQYSNNGVDWDPISEVFIDGSGFQFSEVRQAVEAA
Ga0214917_1001712711	F063331	AGGAG	MTDIDNFALLNDLKELLRQVDLGDTEQVRNELQDIIDRVQADCDERHRIYLERVERYMGHVDSALKDKKQG
Ga0214917_1001712712	F053831	AGAAG	MSNWLKLNYSGDQFKPFHIRVDYCDEVVDFRDMYRFDDAVGAEWIDRTEKEIQDGYKYWVILRARVFLAGIEIGSHSLGGLLFDNTDQMESMMQSDFEDIIEEAVSVARHNLKQMADAMQERVTA
Ga0214917_1001712716	F074804	GGAGG	MIDERLSDQRDEFFLDIQKGDLVFLQADDGSEISGIAVERSIMGWMLEGGVEVTEYDNYLGHISRDRLTGLAA
Ga0214917_1001712718	F049582	GGAGG	MFDKTKIHQELKNRFRNESDLTVSMMNRAISDLDISNPEALDVIYEDVMFFTGDWPETEGWGSSDTSALIRSVEETLISNGYLKAVA
Ga0214917_100171272	F080943	AGGAG	MITEATKERLRELEGQKITLEDELERLSYTNNFARIAHLEQELYDIKDSIKKITQNHWFEDISSEELQKESRILQ
Ga0214917_100171273	F074452	GAG	MPTKKNKINMTRLGIDPFTRAEILETQRAQDYWEMSYVDESNRVRYRMSRVLVEEEILDLLYCHGYITANQQAATINQTRRTDDNRGN
Ga0214917_100171278	F060634	N/A	MIDFIVGFFAVIFFLAFYAYIGYWFLDLKALPAEHWVSRAADRVGSFFGGIWAPMRWKTRRLDIRLLLVIDNLVMRLTNIDFVLLSKRLWAHLVCLYLKMALFVLKLKRLFFERNENKR