NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10015318

Scaffold Ga0214917_10015318


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10015318 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6667
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009887Metagenome311Y
F024787Metagenome204N
F026555Metagenome197N
F033425Metagenome / Metatranscriptome177Y
F036148Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001531811F009887N/AMEMIGADGIRATFTDSGVELDIVPLNQCCEWCNDPRMLNINGVRKCAGCGCVNHIEYKTH
Ga0214917_1001531812F026555N/AMTRFDYHKAMREGHGYNLYVADLLQHFGVPKVDVPAFSIATTHDQIRDKTLNEKDVIVDDLVLEIKSSSRSFTNADNFPFNPVMIDTVSGFDNKIIKPFAYVMISQITQGIFVIPTSTKYDWTIQTYWDAERQIEDQFYLVKKRHCRPFIEMVDVLLERANERTNQMQ
Ga0214917_1001531815F033425GAGGMAIVSSQVTVTTTSQSIVSVDNVSRSVLLHAKQALHIGNSAVTSSNGFLMDNGDKVRLTLNEGEDLWAITATGSGTLYVLVSKVD
Ga0214917_100153183F036148N/AMATKKPRKAPQRRRRAPRKAEALSKLENHYITLNELFRAAKSAGFSHEVAFWLITEPGASMPDWINPGNQPTEIIPRIDPTEDEDND
Ga0214917_100153189F024787AGGAMNSEIYGWLITITLFTLVALLIGVTWMVAVENGYDKGFKSGYKRGLQDAKQSNVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVNLWDRENK
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Institute for Fundamental Biomedical Research
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