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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10014229 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7021 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (85.71%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015467 | Metagenome | 254 | Y |
| F015702 | Metagenome | 252 | Y |
| F023588 | Metagenome | 209 | N |
| F031492 | Metagenome | 182 | Y |
| F032578 | Metagenome | 179 | N |
| F049615 | Metagenome / Metatranscriptome | 146 | N |
| F057369 | Metagenome | 136 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1001422910 | F032578 | AGGA | MNDPIEGRAYDVRNEDIQAINFIKTQIQSLDHDRRNEYATLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKQQYLKAGEALGHLNATQAEQFAQICYGITADQVTIQYIPEQNTFSVQEVRQ |
| Ga0214917_1001422915 | F015467 | GGA | MRRITATIVTTLTLLIGIGTAHAAQAPKPTHSPSTTRMEVIPKERRFNIVFQHGDISWLPQLAAQAGWPPSTWRKLGQIVLRESGGCPARKGGDIVNKDCEVTGVAERTHRSDSGLLQINGVNYDPKRNKYAPICTQMKICTQEPLLDALTNLKAGRLLFEATGSDWSPWIVPEGGW |
| Ga0214917_1001422917 | F015702 | AGGAGG | MKTIELKYTASKLAELAREVWGDNAVEYLAARLTTVVNDNQLKVLIDSLKQAK |
| Ga0214917_1001422920 | F023588 | GGAGG | MSQPMVLVTWADAHSGVESWTPIDELDKDEMIVSTCGFLLATCDGGKPDHVTIYQSRTEEDDVDHVLHIPCAMVRQIAICTPETLMK |
| Ga0214917_100142293 | F057369 | GAGG | MMIEDPIAEFIEAAADGLCTAYVVVATVERIDGSQSFWITTLNRQTSSTTLGLLVSATSAEQYRIAKSLTQGM |
| Ga0214917_100142294 | F031492 | GGAGG | MTQYKKGDRVIIDDESGVIESVSIGAEGTLYDVRYGHTFMIAVDVPEEDIQPWMADEQ |
| Ga0214917_100142297 | F049615 | AGGAG | MTPDTMNLIAELEQRVSELSAALELVTEDRDNLRDAGNSLMTELEACRATLIQAHSDISRLRVYLAQGAEL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |