NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10013992

Scaffold Ga0214917_10013992


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10013992 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7097
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F002826Metagenome / Metatranscriptome527Y
F003304Metagenome494N
F004010Metagenome / Metatranscriptome457Y
F010983Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001399211F003304N/AMKAATMKRALVTQAFGDDWKKVLDLTRPRMEAYCQRHKIDFLALEKPLVEPVQYSKSAIGNIMATKGYEQITFVDSDILIANDCDDIGAEVNMFCAFDEGAFLDRKYEMGKLASAFGAQIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQTWMNIMVHLWNVPVQELDPAYNCMTSVESHFGLDRYKDAYCIHYAGQSGDMPKLIEQIKSDDAKLVELGR
Ga0214917_1001399213F002009AGGVNAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL
Ga0214917_1001399214F010983N/AKMHTEMENILLGRAVSGDETLAPYIETFKKWSDANIEKTYWCEKGLVGAGYAGRCDAYVKLRNVGDAIIDLKNRKVKTGIPFFDQDCAQLWAYRSASENPKAACVSVVLASNDPTKLMTKVWDEDELYQAGIAFCAMQKVWSWVKQYTPPGMKL
Ga0214917_100139924F002826GGAMEVEAKDRLKWACDILLNARNRLAIERDRANHGHAIDIIQIIALVDAAALVCKEIAEEK
Ga0214917_100139925F004010AGGAGMLGKDVSKNMSELAADNRKKGKERGAGGKARSRKQMIAIALSAAGKSNKSPRKFRMRSGM
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