Scaffold Ga0214917_10013974

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10013974
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7104
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CBM2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F067743	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001397418	F067743	N/A	MTLTTTAVPIEIAAELSQKALDYITELVEDNYALDDILQFITEYNGDDLIAYYVDYVEQGEKVGFDVVDAFLQENDISDVARVEDAFIGNYDSEAQFAEDYHNDIMDVPSTLVVDWEETFHQSLSYDYDYVKGHMKGYVFQSNF
Ga0214917_100139745	F013631	N/A	MTTDVFYYTTSRCDWKDEDVNQMRIEEIEESPDVYKYVAVAYNPRKDASMVMSNPRGYFDTLQWVRNFCGSFSIIPD