Scaffold Ga0214917_10013216

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10013216
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7399
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011914	Metagenome / Metatranscriptome	285	Y
F026210	Metagenome / Metatranscriptome	198	Y
F048101	Metagenome / Metatranscriptome	148	N
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001321610	F011914	N/A	MITDNQIKAMSENELAYLYYALNTEWNSLNMGYEFNWYVLRSFKNNTIHPILNKHSANLTDENKGIIMEIVKKLEENI
Ga0214917_1001321613	F071966	N/A	MSLLGIHFDIQGYIFKPFYLLLGALYFIVLLSLLGALYVMLYLRNTLEIVLNNIDKNRKKYNRLK
Ga0214917_1001321615	F026210	GGAG	MNKANPLDYDAKYPQVAESTNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDNNGTPWEWYVREEALRFVEDIGTKIG
Ga0214917_1001321618	F066486	N/A	MKNKTISKNDPYYLKVGKFKKKAVYDAKVDMSDQMENTFESLGREHITKEQYINIGFNYAVAKGIEYTKVLVNKKNK
Ga0214917_1001321620	F048101	AGGAG	MTKKMKMKKFKNIKEFLETCSEDEKEYIYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC