Scaffold Ga0214917_10013045

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10013045
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7467
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F009066	Metagenome	323	Y
F031026	Metagenome	183	N
F043823	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001304510	F031026	GAG	MRGGRNALLLILSLALASCATVSQTQDGPPPSPDTISYFIYAWDKAERTNKPCPQAYRDLFAQSLKALSDSLAETERERARR
Ga0214917_1001304512	F009066	N/A	MELTMNGAEVMSPEHRKHLATIINDLTNDVSAKYVKGQLEHGGALWRRPVWKDAWDEVLDLCTYMHTLKLQLGVIADMALQGAADESVAAATSREACRQILAVLHGLPGSEDKK
Ga0214917_1001304515	F043823	N/A	MKKVKTNLTIDPKVKRKGEQLAKKNGLSFSAYVTTLLVRELSESKK
Ga0214917_100130457	F006891	GAG	MSTDQINELSERLSVVRESVARIETRQSVILDLLERSQASLGEYHGRLTNIEREAHTIKTKLWLVALVSGAVVSTAWELIKRRFGL