NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10013012

Scaffold Ga0214917_10013012


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10013012 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7481
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007911Metagenome / Metatranscriptome342N
F015449Metagenome / Metatranscriptome254Y
F024499Metagenome / Metatranscriptome205N
F058791Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100130121F058791N/ATFTSALTVASSAFSYRSVVSAGITLNNNNAPVNGRYAVLNPSFYGALLNDSTVVANPQITGDLVRTAGIGNVAGFNINQYSAVPSNSITLGGFFAQQEALLIAARVPEVPTGVPIPGDISVVTEPRTGLSVQVRENYDVVKGMLQRTYALIYGVKAGEPNSLVRINGS
Ga0214917_1001301210F015449N/AMIETFWGTTNLKVAAAVATYGATLRAVDPVTCIVKDGQRQFTFWFNDAGTGSAKEEMECSWADMKSDPEAPIRYVKAALQNRETLLGLMKRAEPIIAIKRGEQTILVSERAKPELKRALLNKM
Ga0214917_100130122F024499N/AMSEFTECLKESLAALYDQTGTTATIGSTGVTGILSAISRKENVDLGGFDLDLNSTFTIDVGNLATAPTIGSILLANSVSYRVASIDTSIGSYVLGLREV
Ga0214917_100130128F007911AGGMPAVTMLDRLIEAAFQELLSATVTGPTYHLSHDKTENVPPAIIIKASLGTEEPVRGSGVFSIPVEIVVDDSYDDTTVDAHTQKCSKILQCFYDSSSLSSRLNATTAIGLARIYSAKLESSEASANNEERSYTQNYKLTVIAYPNSIAS
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Institute for Fundamental Biomedical Research
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