Scaffold Ga0214917_10012538

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10012538
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7678
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (29.63%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F049419	Metagenome / Metatranscriptome	146	Y
F062446	Metagenome / Metatranscriptome	130	Y
F064403	Metagenome / Metatranscriptome	128	N
F078229	Metagenome / Metatranscriptome	116	Y
F082109	Metagenome / Metatranscriptome	113	Y
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001253812	F096610	N/A	MANRPKTYFVKMTDNTNGTITISEAKVLDKVNQHARHWRSFDKRKLTSKLRSSDLVTS
Ga0214917_1001253814	F049419	N/A	MKLPKLNLLDLATTYIFFGLVYGSIVTLTWNYLFEPITFVHLSFLQGFGIHLIARILFGNTNTNYISNFYSPKTPDLDKIDSYLKEIEADLNKEADEVERQYEDLDKKD
Ga0214917_1001253818	F044916	N/A	MGKKKVDKSRIEKGLEKEEKTFALMSKKIVDAIKDEKSLRDFTRDCLEELYKDNPNLFADHAKIKLIKK
Ga0214917_1001253819	F064403	AGAAGG	MINARAKILSDLKRAYLKEHPVSLVDRILGHLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF
Ga0214917_1001253820	F036564	GGAG	MKMGRVCVDLNYIVDMDNDEMVRHATEALYEDLMQGIKYGDLANWIRVSEDKNATEDMIQEFLLEKEND
Ga0214917_1001253821	F032548	N/A	MKHNQEMEKAIKLLEELVNQADEDCPQDCRTMHFVNALEEASEFIMEYKNKK
Ga0214917_1001253822	F027756	GAG	MKLKDLIDRKILYINFPMNRHAIQEGKITEISPAEKCIKINNDWHLRENIRIIELFSEKERPALGFN
Ga0214917_1001253825	F030670	N/A	MKVIRYIKELEDEFGEPLEKWAVYEEIQKPNYPHANFIDAKILKTFPSPYHARNWMENDGKNN
Ga0214917_1001253826	F078229	N/A	MSKIKYTYYIEQDKDKDGNLVQAWSIYKTPLVKTIKVKTFKKLKDADAFLDNYESN
Ga0214917_1001253827	F034827	N/A	MKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHSIYMKIRVPNTTSVNIIDLGDGKAYDFSAKKRNTINDPDEQQGNRVYKLNAKINIVVL
Ga0214917_100125384	F062446	AGG	MTFKPIKVIAFTLIVLAWVLMTFFFVGCANTSYHTIPTAMSEDAQDYPTKYNMMDSQDGRRNPNAQVNIFGATY
Ga0214917_100125385	F082109	N/A	MWTPIEIFLLTFLLNHFPMKTERLSVEEVIQNREAQLLVESLGLGNDF
Ga0214917_100125389	F016774	N/A	MPPKNNKIIINKEQLDSLNHWRDQILKMEKSYYNKDLEKERTCRNMINKYLDDVLECNKNIKEKTKK