Scaffold Ga0214917_10012513

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10012513
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7688
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (24.14%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F048121	Metagenome / Metatranscriptome	148	N
F049419	Metagenome / Metatranscriptome	146	Y
F062446	Metagenome / Metatranscriptome	130	Y
F064403	Metagenome / Metatranscriptome	128	N
F078229	Metagenome / Metatranscriptome	116	Y
F082109	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001251314	F049419	N/A	MKLPKLNLLDIATTYIFFGLVYGTIITLTWNYLFEPITFIHLSILQGFGVHLIARILFGNTNTNYISNFYSQKTPDLDKIDGYLKEIQADLDKEADEIEKQYEDLDKKD
Ga0214917_1001251319	F064403	GGAG	MINPRVKILSDLKRSYLKEHPASLVDRILGYLNNLTDFQLCELYSEKYETNPKYIAEQFEFKF
Ga0214917_100125132	F062446	N/A	MTFKPIKVIAFMLIVLAWILITFFFVGCANVSYKTIPDGMSEDAQDYPTKYNMMDSQDGRRNPNAQVNIFGATY
Ga0214917_1001251322	F032548	N/A	MKHNQEMEKAIRLLEELVNQADEDCPQDCRTMHFVNALEEASQFIMEYKNAK
Ga0214917_1001251323	F027756	GAG	MKLKDLIDRKILYLNFPINRHAIQEGKVSEISPSEKCIKINNDWHLISNIRIIELFSEKERPALGFN
Ga0214917_1001251326	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDLIDAKLLKTFPSPYHARNWMENDGKSN
Ga0214917_1001251327	F078229	N/A	MSKIKYTYYVEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKNLKDADAFLDKYESN
Ga0214917_1001251328	F034827	N/A	MKYTITSQDTESLIEFDKIKEGEVFSFFNPESVQRGNHAIYMKIRVPNTTSVNIIDLEDGKAYDFSNKKRNTINDPDEKQGNRVYKLNAKINIVVL
Ga0214917_100125133	F082109	N/A	MWTPIEIFCLTFLFNHSPIASERLSVKEIIENREAQLIIESVTLRNDFQTN
Ga0214917_100125134	F048121	N/A	MNTTNTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGAVVSVSAK
Ga0214917_100125137	F016774	N/A	MMPPKKNKIIINQEHLDSLNHWRDQILKMEKSYYSKDLEKERICRNMINKYLDDVLAYNKNIKEKPKNKV