Scaffold Ga0214917_10012371

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10012371
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7751
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004546	Metagenome / Metatranscriptome	433	Y
F007265	Metagenome / Metatranscriptome	354	Y
F007919	Metagenome / Metatranscriptome	342	Y
F063622	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001237115	F007265	GGAGG	MKMTFQPYNIVPGTEILHSTTDVYELYDEEEGITHKVELNVDNGGVYMEYSEKKIGEKSKLFTECMSIANKELAIVVAKRILELYNVKQ
Ga0214917_100123712	F007919	GAG	MTNKLKFTQISRVICPKTGVHHLDAIDENGIHWVAQQEIGVERWITYKETWKRDPQQPLD
Ga0214917_1001237121	F004546	AGTAG	MAPKEEEFPFDQFPYKLVHKDGKETRKCYFQTEEHRQKHIDRYKLKKKDIKLSCKND
Ga0214917_100123718	F063622	GAGG	MKLKELIHDYYINSNAAQSSDVIANEIVNVVKEWLKNYHKEDNNKYDFDYFSGWADCIDILERDLR