NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10012045

Scaffold Ga0214917_10012045


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10012045 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7900
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010302Metagenome / Metatranscriptome305N
F015434Metagenome / Metatranscriptome254Y
F024955Metagenome203Y
F048773Metagenome / Metatranscriptome147Y
F074801Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001204515F015434GGAGGMESKYPNSWNRHTPKGMNLVDETTKSKKCCDTCECAQTEEEKFNKLMESQTSFEE
Ga0214917_1001204516F074801GAGVLTTTAQLANNMGILDNLEASLFPEEAGNGEIIQDEIPFEVEERLNKEAIEKYNERLKYMEDHGI
Ga0214917_100120456F048773AGGVPTVFDSDGKAAYVYNVANDTWYQVSGKTDISGTFEWTGLHTHLSNFTTSEESVAKKGTNNFLNPSARDAAIPSPTAGTICLIRQNSGGTTINEIQVYIGGTWKTVLPSPVGQTDKFLKSDGTISSWVNAPDAMTQVILMMGA
Ga0214917_100120457F024955GAGGMAVENIGNLVPTKIPALIDDANIQDALKAYHYGSYDFDTAETDPEELLNPSIAYTINDLQDQIDTKAALEVAARDISRASTTAPTAAAFTAFSNTIPDGYVWLDTDSSAGVGYYSATSAYTTTAPSTNLANGLIWIKKGSSPLEMYVYNGDTSTFNRVI
Ga0214917_100120458F010302AGCAGMVDVLLNTDDVVVIGPPESIDLLVDIGPQGVRGSKFIVGSGEPNALTASGVLFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSAIETIPFTSGAASITIPISNIVTVSGSPLTASNFNVQFRIEGANPIASAMEIPALAGAGTNLVINFDAVQYSGGTWSALTGSKTVHLFISIV
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