Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10011824 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8007 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000635 | Metagenome / Metatranscriptome | 970 | Y |
F003112 | Metagenome / Metatranscriptome | 506 | N |
F055684 | Metagenome / Metatranscriptome | 138 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214917_100118242 | F003112 | GGAGG | MWKTLAIWLTNLSLRFLMTQKEYACFKEALRFAGENNTVARETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGRGRES |
Ga0214917_100118247 | F055684 | AGGAG | MWITSENNIIRQPQGIRIGDVNHPASIFWCWSKEQLAQAGIKPYTPASVPEGYRVTGAYTEEIDGEVFERFNLEPVNDPI |
Ga0214917_100118248 | F000635 | GGAG | MTLSEIAQYAGEKVGKTDSDTLLFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTDRTITLGTNVETPLSVSYDQSEVEPIDLATIISQDADLLEDTRTGTPVLYHFTGRNTGGIAQLDLYPRLETAGTISLRVVEKLKCLTRTNLIVDFPPTTQALDDELRLPHVHQVVLSLTHADALERERQYAKAQSVVQTANADLAAMANYELSQVGGIKQITPSSLGDLTNEEITAS |
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