Scaffold Ga0214917_10011796

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10011796
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8022
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021491	Metagenome / Metatranscriptome	218	Y
F023804	Metagenome	208	Y
F046244	Metagenome	151	N
F052462	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001179612	F046244	N/A	MTNEERTAMREHIVWLTTELESARKKLKQRDELLGEMLNPDQLGHAVTQEIRGRIYAMLYLQEENK
Ga0214917_100117964	F052462	GAGG	MTRPIGISVPHRKVEDDDDIQTYKKAWVSLTDKQIHECIAYGKGGCEIEQTAKNIELKLKALNYD
Ga0214917_100117967	F021491	AGGA	MSVEKKIEEMVLKYILAAEGKARIMSPQDIGKLTREAMHKGAMLGYDAGMQMARRSHGNELEIAELTVKELTERVKELELQMIAQQ
Ga0214917_100117969	F023804	AGGAG	MIEDLYRFKCEVDGVTLVCFLEYEPAEFNHGEAPDFPACMNLVNAFCEKIDIAHLLMQSIVDHICEEALTQFNFESDE