Scaffold Ga0214917_10011738

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10011738
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8046
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F012455	Metagenome / Metatranscriptome	280	Y
F047494	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001173811	F000808	AGGAG	MEYNYSLTTSYDGELVHTLRVSDMLEAVNAWTKCVDYGTAKEYATYNLSDPTGKMYTKTFYTNGKVAIK
Ga0214917_1001173815	F005348	AGG	MINSVMSFNCNECNGKGLIFWGDNLDYNVEQCECENFTLGELFTTREAN
Ga0214917_1001173820	F012455	N/A	MLDKIKNKVIRIQELRRSNAATPIPNKKKYTRKVKHKNGKTK
Ga0214917_1001173822	F047494	AGGA	MNSLKNKECAKHLPNKLAISLVNDVKYTFCELCEQNIYSHYIEDSELLSYWSSWKVGK
Ga0214917_100117383	F004132	AGGA	VSDILTQEQLSVPYNPNLLVTYKYIPETYAAPESPTFMTDKVTQIEWDLHNGRNTLKQLAERRLDISWLEDQIVEWHDPNYTKHDVLQAIMEHFGFNPTKQVEVQGTVSFSGTINVPLSEIEDFDLSNVTIDVDLSSYEYDADLNVDEVSLEDHY