Scaffold Ga0214917_10011345

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10011345
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8232
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F009066	Metagenome	323	Y
F026867	Metagenome	196	Y
F029043	Metagenome	189	Y
F031026	Metagenome	183	N
F033352	Metagenome / Metatranscriptome	177	N
F048834	Metagenome	147	N
F072095	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001134510	F048834	AGGAGG	VAIPSVKDWAVALDAYVAGDREEVVPPGWYTKIEIAKQWGKSDVYTNKVLTRMIKTGGAERKVFSIKIKISQRGGKIGHCRRVPHYRLTAPKSRKS
Ga0214917_1001134512	F026867	GAG	MSLGRLNDTAIKLRKENRALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDRWRLMQTGLSSQHRADRLRSAVGKARELASRSDSRVSWRQIENSLKAAVSSLGLPGANENND
Ga0214917_1001134515	F072095	AGGA	MIRDLEKEGVLPASASQSYGSAQLSQTTALIDLQTKHRELRNRLERIEDILKGLIEKQGASL
Ga0214917_1001134518	F033352	AGGAGG	VSEFRLIENIEVMACRNSAERVVKALNRGEVEQAKDLARKHEIAWHITDREFQDLNQPHRNNDFCDDE
Ga0214917_100113453	F029043	AGG	MSKDEQACKALQYLLDEGFISLGYIDGKPAVYLTTSLLEARKAITKLVFNDSADWWK
Ga0214917_100113454	F006891	AGCAG	VSADQVAELSERLSLAREAIARIETRQTVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELIKRRISL
Ga0214917_100113456	F031026	GAG	MLGGRIALLLISALALCSCATTQTQDGPPPSPDSISYFIYAWDKAERINPPCPQAYRDLFAESLKALSDSLAETQRERARQ
Ga0214917_100113458	F009066	GGAG	MTPEHEKHLAGIIRDLTNDVDAKYRAGQDLHGGALWRRPVWKDAWDEVLDLCTYVHTLKMQLSVIAELALIGAADESVVAAQSRESCRQILAVLQGFPSAQDKK