Scaffold Ga0214917_10011297

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10011297
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8256
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F011282	Metagenome	292	Y
F011483	Metagenome	290	Y
F035727	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001129713	F035727	GGAG	VNEEHRQVANSILARLKDGEEFSQSVIRTALTDTGDIAPDGGKGLDQEIQQEIDGRWETGCISMVAASLIRLSEKAWDESRRRITETNE
Ga0214917_1001129719	F011483	GGA	MSDLVTYLRSEIKELHTILQETQLALAMANSKLQRRTEPLTDERIYTLYTRSLDWRQLARDVEADHDI
Ga0214917_100112975	F011282	N/A	MKKIKNLVVITGTYTNKDGQEKKRYQTIGSLFEDGENLKIKLDTIPLVDGGWTGWANCYELEAPAQKPRKSGFDDLPDDLPF
Ga0214917_100112978	F005737	N/A	MFEIETYKKPTDWAQVALYVVSVVAIIVVILDVLYWRA