NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10010944

Scaffold Ga0214917_10010944


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10010944 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8437
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (35.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004723Metagenome / Metatranscriptome426Y
F008080Metagenome / Metatranscriptome339Y
F038674Metagenome / Metatranscriptome165Y
F046324Metagenome / Metatranscriptome151N
F047570Metagenome / Metatranscriptome149N
F075864Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001094413F046324N/AMFCSKTKTKAKLEDCAVSWSGDTLSVCNKCRMSVWDFNFDNFHSQEKISEEE
Ga0214917_1001094414F004723AGAAGMEKFDKFIHTDILGKKHEVTYTGTRREVKGCEFEFFVDDKGDSCFFTDAEVKKMEKKD
Ga0214917_1001094415F047570N/AMTDENKLKIVTLSHNIKALCYILDKKTFSEHCVISGTFTEIESLFELAKELKEMNKEE
Ga0214917_1001094416F075864AGAAGMSPDIDLIHKIPQEVKDAALLLGNYFKKQNINNWALYDVCSRKLVNNLENQVKNLETWKNKQVYGFID
Ga0214917_100109443F008080GGAMLKIQIWMRGTMEYSQDTIPGPTPDQTQEQFEEAFKESDDCYWGGEVYETCPYFDNNKRDSIDVYLGGDDNISNNEKPVFVTSNWEDFEFEKGGGSNYVPDAPDKLGEVNIWWSHDMKFNYVYFWNNFTEFDPNKLKIQYGVDQKGNKYLEDLIYDGEFPDDYNDFGDTGYGYNGPEFVYHPEQKFAEEQED
Ga0214917_100109444F038674N/AMDRKGFFKTLFGGFVAASTIPSLVKAEETHQPPKDLSLSREVLRIDEHGNLGIGGSSNIGLGTSTPRNKIHVEGIVFHVNDRMLEMAGDENGDFKIHWLDPKENERDSHIIISKPKVDPWKTNSIAIY
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