NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214917_10010842

Scaffold Ga0214917_10010842


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10010842 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8491
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002515Metagenome / Metatranscriptome552Y
F003965Metagenome / Metatranscriptome459Y
F005348Metagenome / Metatranscriptome403Y
F009531Metagenome / Metatranscriptome316Y
F011487Metagenome / Metatranscriptome290Y
F014142Metagenome / Metatranscriptome265Y
F014849Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100108421F009531N/AMTQQVAIYEMNYSCSPGGVDCWEATINGYGTSSTASDFKTAGEALNWVLDRYPDEMLELVVTSLPAYEKEYA
Ga0214917_1001084215F014849AGGAGGMLTNLDLIAIFIALSGCLTVMCLFWKQNIQLTKQNRFLRNRIKELQK
Ga0214917_1001084217F005348AGGMINSVMSFDCDECNGVGVIFWGNDLDYDVEKCDCNDFALGDLFTSGEAN
Ga0214917_1001084218F000447AGGCGGMGYIEIFRLDEQGAGWVDLSDATPQELLDLEIGLFQEGAL
Ga0214917_1001084220F003965AGGAMNSNVIIEVCKTHTPNKSAISDVNDEQFTFCEVCENNIERWYNDTDPERLPMWTDWKVSK
Ga0214917_1001084221F014142AGGAMISLNEVSVVVEPTHPMSSSNTKNNNIFRLSNGNYISRKAYVYMVASEKLISHKYLSPNESKWVFAFKN
Ga0214917_100108428F011487AGGAGMGNIADEFYDEYYATVCPSCQENSVDAYEEKCTHCLLEEMSATYNEDIALEMSLGLDY
Ga0214917_100108429F002515N/AMKKSSEELRKLMELRRSNAASAVPSKKAYNRKKCQSELLQLKYQQKGE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.