Scaffold Ga0214917_10010520

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10010520
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8675
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020649	Metagenome / Metatranscriptome	222	Y
F032162	Metagenome / Metatranscriptome	180	N
F043789	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001052015	F020649	N/A	MASKIKNWWGNLKTYDKFFFITFIPAILFTLWGLSDLYINYFDLLSREDHLQFFLRIFFPVSIATFITVLEHNKRKKLIKDIKTYLKQ
Ga0214917_100105205	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVKKALTKVALHSLVNKINAKGRKGGLLDLATDKAQSIIDDMVQTCFLWGATSSEGYSLGTISAEKPSDYCGAISNGRD
Ga0214917_100105206	F043789	N/A	MKKLSKYEQLIANLNKASQDLKDASTKAIATLDAHAQKVETIHQEAMNK