Scaffold Ga0214917_10010404

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10010404
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8742
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (95.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003965	Metagenome / Metatranscriptome	459	Y
F013526	Metagenome / Metatranscriptome	270	Y
F026861	Metagenome / Metatranscriptome	196	Y
F029721	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001040411	F029721	AGGA	MRTYSIEDLLVGQYYRPTSLARRFQGGEINFAEKRDIWVGTDYQAYSIRYNGNNWATIAVRVSDL
Ga0214917_1001040414	F000808	GAGG	MEYTYALTTSYDGELVNTLRVSDMLEAVNAWTKCVDFGDAKEYATYNLSDPLGKMYTKTFYRNGEVSIR
Ga0214917_100104042	F003965	AGGTGG	MTTLTITKCYEHNPMKSAISEVSDTQYTFCQDCEENIERWYDDTDPERLPMWTDWKVSK
Ga0214917_100104045	F013526	AGGAG	LTKKNVLISFVTEAETDLNAVFDLNKIFLALPESDLVKFDVFDVLDVVE
Ga0214917_100104047	F026861	AGGA	MKLHEFQEMIKAQQEAQRLTNLEKIAKIVSTNPKKGNN