Scaffold Ga0214917_10010131

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10010131
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8905
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030020	Metagenome	186	Y
F076903	Metagenome	117	Y
F100688	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001013112	F100688	AGGAGG	VNDPGDEHKHRDILERLDIVWEGMGEMANYERREAAREIRALRDEVRKLRSVLPARISRILYEGEG
Ga0214917_100101315	F076903	GAG	MIDFMLRTDTEAQMDDALEAAGILVEQDIGGGEMVLMVVTGCYVDRIGQIPNGDSRYHVNLRVTIDLTADQVALLPTFAPTPKLPYRVWA
Ga0214917_100101316	F030020	N/A	VGVRLLLAVLLLAGCNPVARISANATAIRNEAQALIDHGNATGDQVVVQGATRIDEHAAAIHGDIPNVQAITPAWLSTLKWWGIALAVVGVAFVLWQSGAFTAVRIAIGWLPRRKVAMADLAVSTLDDSRPEGDRELVAALRADPEFDAAFKRAKGRRKTQA