Scaffold Ga0214917_10009580

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10009580
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9258
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F014142	Metagenome / Metatranscriptome	265	Y
F017133	Metagenome / Metatranscriptome	242	Y
F057310	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000958022	F057310	N/A	MKITYSVWQGSLIKGSRFTASSMKDIAKVIDDLNSTGAKPKFEYFITQVEQENN
Ga0214917_1000958023	F017133	AGG	MTNRIYEPMATLSDYPKGYMNLCPCGQVVKAPALYHEGFPWWDNPNKCKELWENSH
Ga0214917_1000958024	F014142	AGGAG	MSHSVSVVVEPTHPMSSSNTKDNNIFRLANGNYISRMAYVYMLSNKEGCVSHRYLSPNESRWVFANKVGA
Ga0214917_1000958032	F002489	AGGA	MTENNEQPQNLEDNLPMVNYIMLHRIYDLLTLISNKLVGSEDTSKMVEYHNQGYLLGPTPSFVPETPDTDINFVQDTIDLEQ