NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10009265

Scaffold Ga0214917_10009265


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10009265 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9466
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014714Metagenome / Metatranscriptome260N
F017469Metagenome / Metatranscriptome240Y
F022400Metagenome214Y
F024719Metagenome / Metatranscriptome204Y
F026822Metagenome196Y
F027758Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000926510F022400AGGMRRIVIESSQRTTLRLVSGGKEESGSAYSPFGPVRAGLTTMQRTNEDQVLTELLSSLERKITDLNIKSYEALNTLINDTTHLVEPTNSFSPIDITK
Ga0214917_1000926512F024719GAGMRVRVKMSNVIELPNRGKIAVIFYEVSDSQGLAIWGGENPTQALKWYRNSPPESKIWVSQWEADEEDAKQVIKPVEITPIVLATIADCMGRWSK
Ga0214917_1000926513F026822AGGAGGVSEPRYLEGDDYALNGIELDIIKCKECASEYDYAEYHSYTCSDCEDKMIARERARV
Ga0214917_1000926516F017469GAGGMSICQFCGWEITKPEWYNSYDGSYACDDCLMDKALEQEKEREGAR
Ga0214917_1000926522F027758AGGMLTDLLFSFIWVFGFFFLAGCIAWLADQLVSFHLEGMERVRRLQEKERESEGAR
Ga0214917_100092655F014714N/AMIELKEPELLDYLKEFYYPDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFNLSAIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF
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