NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10009112

Scaffold Ga0214917_10009112


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10009112 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9587
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (35.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035757Metagenome / Metatranscriptome171Y
F053990Metagenome / Metatranscriptome140Y
F093764Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000911222F035757AGGAGGMHNKFAVVLSSLVDGATVSIQFLVNSDMTAKQLRSFYLCKGSVSVSDVYVETLVDT
Ga0214917_100091125F093764N/AMARRSISKSREMVESLQETLVECFRDSILDDCDYEGMTGSDFLEALVGTFRELESDIQDQLKPIQYVLDKLDPENVVTTV
Ga0214917_100091127F053990AGGAGGMIDTCVLHDDYEDFAQKFLGIEYEDFVGLQLGIPDEDEIEIEYSLSF

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