Scaffold Ga0214917_10009083

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10009083
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9609
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F011208	Metagenome	293	N
F021063	Metagenome / Metatranscriptome	220	N
F033721	Metagenome / Metatranscriptome	176	Y
F058800	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000908310	F002826	AGG	MQSEAKARLKWGRDILLTAREKLVVERDRASHGHAIDMIQIITMVDAAALICKEIIEESVDAHSKDK
Ga0214917_1000908315	F021063	N/A	MRSTHLTKGDYDERLQQLAGEVALQAIRDLRMLRKRGMVEDMKIVRDHHGVPLNDALEYKNMHEVQNLIKDFKNGTVAWWCRASGIRIDNRTLLRKLKDDDYAIA
Ga0214917_1000908317	F003304	GGAGG	MKKGLVTQAFGDDWKKILELTQPRMEAYCKRHKIDFMALEKPLVEPVQYSKSAIGNIMATKGYEQITFVDCDVLIANDCDEIGAEVEMFSAFDEGAFLDRKYEMGKLASAFGARIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQTWMNIMIHLWNVPLDNLDPAYNCMTSVESHFGLDRYKDAFCIHYAGQSNDLVKLGEQIKADDAKLVELGR
Ga0214917_1000908318	F058800	AGGA	MKHNLSRLFYFLGDTISHTLLRLGIGYGLYRTFMLWSIDLDEKFDVWREVKPKRRKKK
Ga0214917_100090832	F011208	AGGAG	MTEEEIIKAYLSRLGRKGGSVKGSCKARKLSREHYQTVAQAQRERWQKWRAENGRPTTKR
Ga0214917_1000908320	F033721	AGGA	MRWIKKEFDEDGKPEWAVYIDEAGEGREEDWSHFDTYPTRDEAVEACWKFTWEDYDCNDK
Ga0214917_1000908321	F002009	N/A	MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDVNGETSIDHLERALVRSLFVLAQIRKEVPRL
Ga0214917_100090834	F003962	N/A	VEVDEGQEGRVLNQDREQLKLANRFISLLQKENAQLHGVLRLLGQLVDDMDANCSFEVFEHQWEGLTDEVNRLSGFFESHQKALQVLHDACPEAFDSDEVDES