Scaffold Ga0214917_10009061

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10009061
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9626
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004793	Metagenome / Metatranscriptome	423	Y
F042308	Metagenome / Metatranscriptome	158	Y
F049581	Metagenome	146	Y
F072277	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000906116	F004793	GGAGG	MTLEEAKKIVGNQPTWALKNMVKALQMLPWRNTAEDEQRLLAAKVVLRERNKK
Ga0214917_1000906118	F049581	AGGAG	MTIQIGQRPFDEDVLIDQIGRMNVFAISGGRVGVVKNNEGETIEVELPCGAGYRVSIILAWDDTYTVTRQFVRKGTVFQKGTVEGVYCDQVGEIAYKASCFRNVEFGKVSA
Ga0214917_1000906120	F072277	AGGAGG	MEKCVKCGVAIEKMEVFPKGVCLACYAVEFEKEFQSALKIARLK
Ga0214917_100090614	F042308	AGGCGG	MGWDVTQVGSNISTKKFINWYLKTTYDGVYEPVKVFEGKNVGGQKAFYVALKKLEDNSIFACVFLTRRKNGSVAVKVMGESEQPYYYEAPESFINVLTPAKTLEGAWWRNRCLEKEVA