Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10009033 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10009033 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9646
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (81.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9646

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (81.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F019644	Metagenome	228	N
F021759	Metagenome	217	N
F025023	Metagenome / Metatranscriptome	203	N
F058107	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000903314	F005528	AGGA	MRILTAILATLTSLTLSLGIAQAVSAPAQPSVAVIALQPLWQADRLDPIQPIRYRHGDVSWLPSLAKQTGWPDQAIPQLAQIVLRESGGCPNRKGGDIVDKNCNITGVSEWNHRSDTGLLQINGVNYDPSRNKWAAVCRELNICTQTPLLDPITNLKAGLVLYNLSGFEAWNPCNWRDC
Ga0214917_1000903315	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTEPAEVQSVGFLLATSDGGKPDHITLYQSRNEDSVDHVLHIPIGMVKHIKVLMDIEINSSDR
Ga0214917_1000903316	F021759	AGAAGG	MDAGLATVLAAAVATFGAIIIAIMQLKGFRDENRADHAVVQKRLDTVIDMVGKQGAKLTSHLDWHLTKEPSKDHTVKQVATRKKK
Ga0214917_100090332	F019644	AGAAG	MSREGSFDDRIKYFIESEVDADNVCTAYVLVATIQNFKTTEEKFFTICPPEQVTSTTIGLLESASAAEKLRIARQLTQDD
Ga0214917_100090335	F058107	AGGA	VITIGMDSFIVCQICDGEVRLDNKRITGCLCDPDAPTWVGIEPNGRVLTFSQSNYEIVTDLGPRHQYD
Ga0214917_100090339	F025023	AGAAGG	MTDLFEGRIMDVGVDRTCVLQLQSDFDSLRPHQRAMVKKIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDSACAEQFAVICRAIRWDEQDIVWNTSTDSFGFPSKEKVG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10009033

Overview

Ecosystem & Geography

Associated Families

Sequences