Scaffold Ga0214917_10008621

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10008621
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9964
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001125	Metagenome / Metatranscriptome	769	Y
F004051	Metagenome / Metatranscriptome	455	Y
F005177	Metagenome / Metatranscriptome	409	Y
F007470	Metagenome / Metatranscriptome	350	Y
F013526	Metagenome / Metatranscriptome	270	Y
F021481	Metagenome / Metatranscriptome	218	Y
F038643	Metagenome / Metatranscriptome	165	Y
F078406	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000862112	F005177	N/A	MKNRYRVEIYDENKNNDLTIYSEQGVDKEYLTELVFSNLRRFSGNVRAYVYDNLKKKKTTALYLPMEVIPKKTELTKLLG
Ga0214917_1000862113	F021481	AGGA	MSPILDVRKGRFYKKGDVFTTGKSGITGTISEIVSIRPNLTKLGLNTENGLRWAMVKIGA
Ga0214917_1000862115	F004051	AGGA	MTIGNKTYQVGDLFTTLKSKETGVIKEIIPNASGSVRVRLATDNGERWTTISADTLA
Ga0214917_1000862117	F078406	AGGA	MIATATALIQATEESIFDEEVMGFAQAFCHHAKDLDTEQFAKSIYIYSTMLASLAVDKAMKVLLNEEQIIDLMNAIDELETMRDEVMNNGE
Ga0214917_1000862118	F038643	AGG	MKDKSNWKSYPFTVDGVEFLSLIDPNGSMYSQIQRVPAQVFTQMNEQAIRELIGNASLMSKSEIQTELDRVNDGYSQAYLALA
Ga0214917_1000862125	F013526	GGA	MKKVVLISFVTEAETDLEAVFALNKILYQLPENDLVKFDVFDVVEADGVKA
Ga0214917_100086214	F001125	AGGCGG	MGDRANFGFRQSNENVVFLYGHWAGHNMLEKLANAVVAARPRWTDESYATRICISQLIGEDWNQELGWGLHINEIGDNEHKVPVIDWSNQTFTLYQEDLKTKIFSMSLIDFCTKYSQLIM
Ga0214917_100086216	F007470	AGGAG	MDYQEGFQDGVTFAREVIIANIRQWAESSDDGQIYDDIADRIEFGTVDYDL
Ga0214917_100086217	F000311	GGA	MYFELTAPDRLSLEMAYWEAQISGLDPEFMPPLTFNVGTGSIEKVSRIRDKFNLKETYTADAIETGYTRR