Scaffold Ga0214917_10008513

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10008513
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10054
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (34.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022820	Metagenome / Metatranscriptome	212	Y
F024954	Metagenome / Metatranscriptome	203	N
F032162	Metagenome / Metatranscriptome	180	N
F043789	Metagenome / Metatranscriptome	155	Y
F056412	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000851323	F024954	N/A	MIENLVVGKYYQIENHIGVCELYNNKKQLRKITSVGVVTQFCDEMLEVEMTPELLKECEDRKNGVMNFIGSFNASSKYKGD
Ga0214917_1000851326	F056412	N/A	MKRKTKFEILLGNLDKASADLKKAVEESQKRLDESFAKYQHKVEVAHHNSMIINEKQIEEKI
Ga0214917_1000851331	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFYNGIYNWCGTNGKLHDMGNGKAFYFYAHPDDVKKALTKIALHALVNKINAKGRKGGLLDLATNKAQSIIDEMVQTCFLWGATSSEGYSLGTITAEKPSDYCGAISSGRD
Ga0214917_1000851332	F043789	N/A	MKKKLSKYEQLIANLNKAAQDLKDASTQAVATLEAHAEKIESIHQDAMQK
Ga0214917_100085136	F022820	N/A	MKHENRISKILEKRVLKDEDPKLIAEIEKHLAGLEVVWHKWVKAHPNWREQEE