NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10008429

Scaffold Ga0214917_10008429


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10008429 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10128
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025458Metagenome / Metatranscriptome201Y
F093506Metagenome106Y
F104721Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000842912F093506N/AMSATIHTNISSFGFDYEPDIITDNGRDGITAFQFSIVGSFSRLQTSFDLDQVVSGVPDQPPGNFRVVRRNLSHIAGDTATGLYRLEVSAEGGTGNKSLYVLESSYQYQKETATGQYFNEIFGGSTPLQYNLEWLSPTVTITTNSQSEDIVDVQNRAKAIVTTLSVQVIKNKPVTAPNGKNVIGVNIDESKIIITGSSVEKAGGLYRVRASATKGQVQDPLDVK
Ga0214917_100084292F025458N/AMLLGLNMSNFMGNKNIHYNLDGTSVFTDTRTIEEAHEENLVRIRELVTAKITEAGYDEVWQRNAALGVLTNLEVEQGREFIANLRSAYHDYKARLLASARDEADAVQFVALSVPENLWTR
Ga0214917_100084297F104721N/AMQEKILYTRNIKLASVLATFGIPFRDKEPMAVIEDADDNNRRSVTFFFADLPNGVGGKIVELWEKGWAGITNYDDPLAYCRAVLENRERLLDAINNATPLVKKQFGKATLLISKNATPELRKKLSKYI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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