Scaffold Ga0214917_10007731

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10007731
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10768
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F039992	Metagenome / Metatranscriptome	162	N
F081071	Metagenome / Metatranscriptome	114	Y
F086661	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000773110	F003112	GGAGG	MWKTLAIWLTNLSLRFLMTQKEYACFKEALRFAGENNTVARETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES
Ga0214917_1000773111	F039992	GGAGG	VSLDEIHDLREKFGTMSERLARMEERQVTLIGMVERSLSSFGDLSNRVTSLEHLKTKMLLVAGSIGAIVSVVWDAVRSRLTPGG
Ga0214917_1000773116	F000635	N/A	VTLSEIAQYAGEKVGKTDSDTLVFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTNRTITLGTNVETPLSVSYDQSEVEPIDLATIISQDADLLEDTRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTISLRVVEKLKCLTRTNIVVDFPPATTALDDELRLPHVHQVVLALTHADALERERQYAKAQSVVQTANADLAVMANYELSQVGGIKQITPSSLGDITTEEITAS
Ga0214917_1000773118	F081071	AGAAG	VTVVEFIEASGVPESMWPNFREWFKWHMERDLVGVAKDGEEVAGVAIARCVKGMEAPEPYEHDEAGESVFVDLTVTSIDGKSNALSRKALKCLLSILWDRFGPRRRITFKRNGFYKEYDYYNFMRKALN
Ga0214917_100077314	F004760	AGGAG	MPIYQYEDTRNGSVIELEKAVADRDSVPRYLKRFSVPQRLTLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSKFKSRYTPDQIKRASVKRS
Ga0214917_100077319	F086661	GGA	MTKTIVFNQDGSSFIEDFRNLSASKDENISYARSAASEAIKSAGLDEATQQNASLGIYPLERCEAIKSYIAACRNEYLRCKGLILAAQTNDEADAVQFVAPSVPEGI