NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10007722

Scaffold Ga0214917_10007722


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10007722 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10786
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017268Metagenome / Metatranscriptome241Y
F034466Metagenome / Metatranscriptome174Y
F047507Metagenome / Metatranscriptome149N
F083776Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000772212F083776N/AVIVSDRDIDFFAKRLGLSPEKTFLLIQDPECLPEILNKICEYDVDGIVDISFPVFAEITIIKYSKDLNYSFEEKEYVSEAVGLKFYDLIGEPIIKKSILELKHDEDTAKSLLVFLGFFYKNLNRPRRAYPSEKTYYNIAKNGFENSDKIHISEHLEDWIKVLRIIHNEVWF
Ga0214917_1000772213F017268N/AVNLDITLLFNLILGALSFLGGWLFTRVFSLFDKQENLMKEINDKTFSDFITLRKEMESESRKHQQEISDLALKISTTYVTKESFDDYFDRIESKLDRNFDIIQNHFNRNNKN
Ga0214917_100077222F034466GAGMDNKLRNLLLNNYEKSLPSKRDTEEFISNFHQYRAKKKAQEKTHYALIFACVLILSMIGSIVAKQTKNNLDIQTASGTEKCNTQVMEKK
Ga0214917_100077225F047507N/AMINKLNKLWNWKSKTLLVGLVLIVSWIACLKIGFELKKYNSITNLPNSCFVDAMIYASRCNLLLVTTSDSWNSVYGFTFGYKDDKEAILGHAVCVFEYNNNLWMYDPNWGTSPICQIGDRKKYKEKIKLHINKTYPIIVIEDFMLNDWTYVQKAKKNKMNKSYKEVSIHLDESKKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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