NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10007666

Scaffold Ga0214917_10007666


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10007666 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10850
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029419Metagenome / Metatranscriptome188Y
F036680Metagenome169Y
F039535Metagenome / Metatranscriptome163Y
F074589Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000766615F029419GAGMTMMSEDRKGECQGNRDKCNLKDCPKFGTLGRPARDGNRRVKGCSDPTARGKRSRTKGLSKQRTARKRLGVAPSHKFGDGNEERWQDVLFANEVKAGKQIGAAVTAWLRIEAQVRSNEADYGSRRKPTRAILMPDDWGSEGLVMVRLSTWEELVRPAMHEYYEGGASE
Ga0214917_1000766617F074589AGGAGGMTPAQIEGFIDRICGLFPTSQIGRNTVKNAWTADDFLLLQDVDDARKVVPLIMEHHEKFPSLKEVHRLFALLRKPATEQTVVVCEICDGNGWDNGKRWNFNTKELICEGFTKTVLERTYTYVVPCKCREFGKA
Ga0214917_1000766618F039535N/AMLGLRHTPTEANDERTRHDLSRTEQRKLETYNQVQKEDKVIGVNVKKLLIMFIVSVVGFAGVADAASAPQGVKQLQMRQHPFDFVVDIKRTVPEWAKCPEIWNRLRDAGWLEKDVVKADQIVWRESRCIATAHNKNDPNTVQGVKGSLGLFQINLFWVQRTTYYPNGYLQTVLNRDLVPADLFDVSTTIDAAQALIAYDRGLGRCGWSAWLGC
Ga0214917_1000766621F036680AGGAGMKITKHSLDHIELIASGDTALFEVRLIVAMHDWSDDEADAGFDEIGALGWLMNLLHLAAQGEDIKTGAEEFLKAMMTLDEQRVYLAKVERISMNEE
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