Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10007023 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10007023 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11515
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (64.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11515

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (64.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003112	Metagenome / Metatranscriptome	506	N
F014487	Metagenome / Metatranscriptome	262	Y
F020886	Metagenome / Metatranscriptome	221	N
F055684	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000702310	F020886	GGAGG	VSLDEVSDLREKVQNVSIALVRMEERQMTLYSMIERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN
Ga0214917_1000702314	F055684	AGGAG	MWITTNNNIIRQPEGIRIGDVNHPASIFWCWSKEQLAEVGIKPYTPASVPEGYRVTGAYTEEIDGEVFERFNLESINDAN
Ga0214917_1000702315	F000635	GGAG	MTLTEIAQFAGEKVGKTDSDTLTFLQKSASLAYRRVWDFAPWRETVTNSTYSVGTTRLITLGTNVETPLSVSYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGIAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQTALDDELRLPHVHHLVLALTHADALERERQYAKAQAITQSANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0214917_1000702317	F002149	AGAAGG	MTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGIVRDNDGIAGVALARCIKDGQEPNHYVHSEDGENVFVDLTISSKGAKSLGGLLLLLAERFGPRKRI
Ga0214917_100070238	F014487	N/A	MQFIKLVLICFALSSCSPKPADNNVLPRYSDMGAATDAGNVK
Ga0214917_100070239	F003112	GAG	MTGQEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDREEVTDAVVHLAVALKYLEGKGRES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10007023

Overview

Ecosystem & Geography

Associated Families

Sequences